TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1514b-3p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AUGCCUAUUUUAAAAUGAAAA

miRBase

Precursor miRNA Sequence(5'-3')

CUUUGCUAUUUUCAUUUUUAAAAUAGACAUUGGGCUUCUUCUUGUUCCUCUUUUUUCCUUCCAAUUCCGAUUUGGUCCUAAUGCCUAUUUUAAAAUGAAAACAAUGAUA

miRBase

Precursor miRNA Structure(5'-3') 

CUUUGCUA          U       A       -  UCU  UUGUUCCUCUUU 
        UUUUCAUUUU AAAAUAG CAUUGGG CU   UC            U
        |||||||||| ||||||| ||||||| ||   ||            U
        AAAAGUAAAA UUUUAUC GUAAUCC GG   AG            C
AUAGUAAC          -       C       U  UUU  CCUUAACCUUCC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pvu-miR1514a         --UUCAUUUUGAAAAUAGGCAUUG
gma-miR1514a-5p      --UUCAUUUUUAAAAUAGGCAUU-
gma-miR1514b-5p      --UUCAUUUUUAAAAUAGACAUU-
gma-miR1514a-3p      AUGCCUAUUUUAAAAUGAAAA---
gma-miR1514b-3p      AUGCCUAUUUUAAAAUGAAAA---
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