TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1514a-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUCAUUUUUAAAAUAGGCAUU

miRBase

Precursor miRNA Sequence(5'-3')

CUUUGCUAUUUUCAUUUUUAAAAUAGGCAUUGGGGUCCCUUCUUGUUCCUCCUUUUCCUUUCCUAUCCCAAUGCCUAUUUUAAAAUGAAAACAACGAUA

miRBase

Precursor miRNA Structure(5'-3') 

CU   CUA          U                 CCCUUCUUGUUCC 
  UUG   UUUUCAUUUU AAAAUAGGCAUUGGGGU             U
  |||   |||||||||| |||||||||||||||||              
  AGC   AAAAGUAAAA UUUUAUCCGUAACCCUA             U
AU   AAC          -                 UCCUUUCCUUUUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pvu-miR1514a         --UUCAUUUUGAAAAUAGGCAUUG
gma-miR1514a-5p      --UUCAUUUUUAAAAUAGGCAUU-
gma-miR1514b-5p      --UUCAUUUUUAAAAUAGACAUU-
gma-miR1514a-3p      AUGCCUAUUUUAAAAUGAAAA---
gma-miR1514b-3p      AUGCCUAUUUUAAAAUGAAAA---
                         *  *** *****    *