TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR10416

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AAGAUUUGACUGUUGGAACUGCCU

miRBase

Precursor miRNA Sequence(5'-3')

AUUCUGACCAAGGCACUUCCAAAAGCCAAAUUUGAAUACUUGAGACAAAAGCUUGGAGUUUGCAAUUCCAAAGUCAAGGAGGAGUGUUAAGAUUUGACUGUUGGAACUGCCUAACAAAUUAU

miRBase

Precursor miRNA Structure(5'-3') 

AUUCUGACCA     C      A  C       G       GAGACAAAA    -        
          AGGCA UUCCAA AG CAAAUUU AAUACUU         GCUU GGAGUUU 
          ||||| |||||| || ||||||| |||||||         |||| |||||| G
          UCCGU AAGGUU UC GUUUAGA UUGUGAG         UGAA CCUUAAA 
UAUUAAACAA     C      G  A       A       --GAGGAAC    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR10416       AAGAUUUGACUGUUGGAACUGCCU
aly-miR848-5p      GGCAAUCCCAUGUCAAA-------
                      * *    ***   *