TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR848-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

GGCAAUCCCAUGUCAAA

miRBase

Precursor miRNA Sequence(5'-3')

UAGUUUCGACUUCCACAGCCUUUAUAUAGCUUGGCAAUCCCAUGUCAAAUAAGGCAAAGAAGAGGAACCCAAGGUAUGUUUCUCAUUUGCCUUCUUUGACAUGGGACUAACAGACUAA

miRBase

Precursor miRNA Structure(5'-3') 

UAGUUUCGACUUCCACAGCCUUUAUAUAGCUUGGCAA            U        GAA       CCA 
                                     UCCCAUGUCAAA AAGGCAAA   GAGGAAC   A
                                     |||||||||||| ||||||||   |||||||   G
                                     AGGGUACAGUUU UUCCGUUU   CUCUUUG   A
-------------------------AAUCAGACAAUC            C        --A       UAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR10416       AAGAUUUGACUGUUGGAACUGCCU
aly-miR848-5p      GGCAAUCCCAUGUCAAA-------
                      * *    ***   *