TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR162-5p

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

GGAGGCAGCGGUUCAUCGAUC

miRBase

Precursor miRNA Sequence(5'-3')

GGUUGUGGGAUGGAGUCACUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGAGAUUUUUGUCUGUGGAAAAAAAGAAACACAAAAACAUGAAUAGGUCGAUAAACCUCUGCAUCCAGCGCUCACUCACUAUC

miRBase

Precursor miRNA Structure(5'-3') 

   U     AUG   U A     G    C    C        C   C  AGAUUUUUGUCUGUGG 
GGU GUGGG   GAG C CUGGA GCAG GGUU AUCGAUCU UUC UG                A
||| |||||   ||| | ||||| |||| |||| |||||||| ||| ||                A
CUA CACUC   CUC G GACCU CGUC CCAA UAGCUGGA AAG AC                A
   U     --A   - C     A    U    A        U   U  AAAAACACAAAGAAAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR162a-5p      UGGAGGCAGCGGUUCAUCGAUC
ath-miR162b-5p      UGGAGGCAGCGGUUCAUCGAUC
csi-miR162-5p       UGGAGGCAGCGGUUCAUCGAUC
aly-miR162a-5p      -GGAGGCAGCGGUUCAUCGAUC
aly-miR162b-5p      -GGAGGCAGCGGUUCAUCGAUC
stu-miR162a-5p      -GGAGGCAGCGGUUCAUCGAUC
fve-miR162-5p       -GGAGGCAGCGGUUCAUCGAUC
stu-miR162b-5p      -GGAGGCAGCGGUUCAUCGAUC
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