TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR162a-5p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGGAGGCAGCGGUUCAUCGAUC

miRBase

Precursor miRNA Sequence(5'-3')

UAGUUGGAAGAAGAGUGAGAGUCGCUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGUGAACACAUUAAAAAUGUAAAAGCAUGAAUAGAUCGAUAAACCUCUGCAUCCAGCGUUUGCCUCUUGUAUCUUUCUUAUUGACUU

miRBase

Precursor miRNA Structure(5'-3') 

U      -     -  -G      ----U       G    C    C        C   C   GAAC       
 AGUUGG AAGAA GA  UGAGAG     CGCUGGA GCAG GGUU AUCGAUCU UUC UGU    ACAUUA 
 |||||| ||||| ||  ||||||     ||||||| |||| |||| |||||||| ||| |||    ||||| A
 UCAGUU UUCUU CU  GUUCUC     GCGACCU CGUC CCAA UAGCUAGA AAG ACG    UGUAAA 
U      A     U  AU      CGUUU       A    U    A        U   U   AAAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR162a-5p      UGGAGGCAGCGGUUCAUCGAUC
ath-miR162b-5p      UGGAGGCAGCGGUUCAUCGAUC
csi-miR162-5p       UGGAGGCAGCGGUUCAUCGAUC
aly-miR162a-5p      -GGAGGCAGCGGUUCAUCGAUC
aly-miR162b-5p      -GGAGGCAGCGGUUCAUCGAUC
stu-miR162a-5p      -GGAGGCAGCGGUUCAUCGAUC
fve-miR162-5p       -GGAGGCAGCGGUUCAUCGAUC
stu-miR162b-5p      -GGAGGCAGCGGUUCAUCGAUC
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