TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR156j

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

UUGACGGAAGAGAGCGAGCAC

miRBase

Precursor miRNA Sequence(5'-3')

UGUUGACGGAAGAGAGCGAGCACAACCCGGCAUUGGUGAAAGAGAGCUUUGCCACUGUUGGGAGUGUACUCGUUCUUCUUCCGUCAGCG

miRBase

Precursor miRNA Structure(5'-3') 

U            -       C   -A       U    G    A 
 GUUGACGGAAGA GAGCGAG ACA  CCCGGCA UGGU AAAG G
 |||||||||||| ||||||| |||  ||||||| |||| ||||  
 CGACUGCCUUCU CUUGCUC UGU  GGGUUGU ACCG UUUC C
G            U       A   GA       C    -    G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bdi-miR7761-5p      CAGUGCCGUCUCUUCCUCAAGUUC
fve-miR156j         --UUGACGGAAGAGAG-CGAGCAC
                       ** **         * **  *