TarDB

Precursor miRNA Sequence(5'-3')

AUGCUUUCUGACGUUGUUGCCAGUGCCGUCUCUUCCUCAAGUUCUGGUGGGGACAGGAUAGGAGUGAGUGAGAAUGGUGGUGGUGGUGGCAGCAGCGGGAUCGAAAGGGAGUUAGGGUUGGUUUGGGGGCUUAUAUGUUAAAGUCAUGGGCAGGUUGGGCCGGGCCGGCCCAACCGCUCACAACCACUAUGAUAACCACUGAAAUUAUACUCUAGCCCAACCUGUCCAUAACUUUAAUAUGUAAUCCCCGCCCCCGCCCCCACCCCAACCCUAACCCCCUCUCAGUACUGCCGCCGCUGCCACCGCCGCCACCACCAUUUCCAGUUCCUCUCACCCUGUCGCCACCAACUCUUGAUCAAGAGACGGCUCUGGCGGCAACGAGG

miRBase

Precursor miRNA Structure(5'-3')

AUGCUUUCUGA            U          CC     UUC      G      AUA    U  G  A   ----                   A    G --U -  A    A           UU       -----------              C               CGGGCCGGCCCAACCGCUCACAACCA 
           CGUUGUUGCCAG GCCGUCUCUU  UCAAG   UGGUGG GACAGG   GGAG GA UG GAA    UGGUGGUGGUGGUGGCAGC GCGG A   C GA AGGG GUUAGGGUUGG  UGGGGGC           UUAUAUGUUAAAGU AUGGGCAGGUUGGGC                          C
           |||||||||||| ||||||||||  |||||   |||||| ||||||   |||| || || |||    ||||||||||||||||||| |||| |   | || |||| |||||||||||  |||||||           |||||||||||||| |||||||||||||||                           
           GCAACGGCGGUC CGGCAGAGAA  AGUUC   ACCACC CUGUCC   UCUC UU AC CUU    ACCACCGCCGCCACCGUCG CGCC U   G CU UCCC CAAUCCCAACC  ACCCCCG           AAUGUAUAAUUUCA UACCUGUCCAACCCG                          U
--------GGA            U          CU     UCA      G      CAC    C  G  -   UACC                   C    G CAU A  C    C           CC       CCCCCGCCCCU              A               AUCUCAUAUUAAAGUCACCAAUAGUA

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.