TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

cru-miR391

Organism

Capsella rubella

Species

Mature miRNA Sequence(5'-3')

UUCGCAGGAGAGAUAGCGCCA

PmiREN

Precursor miRNA Sequence(5'-3')

AACTGCAAACAAAGATTCGCTTCGCAGGAGAGATAGCGCCATCGCCTAAGTTTAACTAGCGGTGACGGTATCTCTCCTACGTAGCAATCCTTATATATGCATCTT

PmiREN

Precursor miRNA Structure(5'-3') 

-AAC    --AACAAA    C   U  C          G  C      CUA     
    UGCA        GAUU GCU CG AGGAGAGAUA CG CAUCGC   AGUU 
    ||||        |||| ||| || |||||||||| || ||||||   ||| U
    ACGU        CUAA CGA GC UCCUCUCUAU GC GUGGCG   UCAC 
UUCU    AUAUAUUC    -   U  A          G  A      --A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR391a        UUCGCAGGAGAGAUAGCGCCA
bra-miR391b        UUCGCAGGAGAGAUAGCGCCA
cru-miR391         UUCGCAGGAGAGAUAGCGCCA
aly-miR391-5p      UUCGCAGGAGAGAUAGCGCCA
ath-miR391-5p      UUCGCAGGAGAGAUAGCGCCA
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