TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR391-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UUCGCAGGAGAGAUAGCGCCA

miRBase

Precursor miRNA Sequence(5'-3')

GCAAACAAAGAUUUGCUUCGCAGGAGAGAUAGCGCCACCACCUCUUCUAAGAAGUUAACCAGUGGUGACGGUAUCUCUCCUACGUAGCAAUCCUUAUAUAUGC

miRBase

Precursor miRNA Structure(5'-3') 

   -AACA   AU     U  C          G  C      -----CU      
GCA     AAG  UUGCU CG AGGAGAGAUA CG CACCAC       CUUCU 
|||     |||  ||||| || |||||||||| || ||||||       |||| A
CGU     UUC  AACGA GC UCCUCUCUAU GC GUGGUG       GAAGA 
   AUAUA   CU     U  A          G  A      ACCAAUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR391a        UUCGCAGGAGAGAUAGCGCCA
bra-miR391b        UUCGCAGGAGAGAUAGCGCCA
cru-miR391         UUCGCAGGAGAGAUAGCGCCA
aly-miR391-5p      UUCGCAGGAGAGAUAGCGCCA
ath-miR391-5p      UUCGCAGGAGAGAUAGCGCCA
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