TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR868-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

CUUCUUAAGUGCUGAUAAUGC

miRBase

Precursor miRNA Sequence(5'-3')

GAAUAAGCAUUGUCGGCACUUGAGAAUGUAAAGUGAUGAUCAGCUAUCGUAUUUCAUGUCGUAAUAGUAGUCACGUUAGGGUGAUAUAACGAGGCGAGAGUUAUAUCAUCAUAGUGCGAUUUCUAUUAUGACAUAAAAUACGUUUUGGAUUUUAAAACACUUGACCUUCUUAAGUGCUGAUAAUGCUUCUUUC

miRBase

Precursor miRNA Structure(5'-3') 

   -U                      U  A     ----AU    AGCUAU       C            U    A     G           GAG 
GAA  AAGCAUUGUCGGCACUUGAGAA GU AAGUG      GAUC      CGUAUUU AUGUCGUAAUAG AGUC CGUUA GGUGAUAUAAC   G
|||  |||||||||||||||||||||| || |||||      ||||      ||||||| |||||||||||| |||| ||||| |||||||||||   C
CUU  UUCGUAAUAGUCGUGAAUUCUU CA UUCAC      UUAG      GCAUAAA UACAGUAUUAUC UUAG GUGAU CUACUAUAUUG   G
   UC                      C  G     AAAAUU    -GUUUU       A            U    C     A           AGA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR868-3p      CUUCUUAAGUGCUGAUAAUGC
aly-miR868-3p      CUUCUUAAGUGCUGAUAAUGU
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