TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR861-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

GAUGGAUAUGUCUUCAAGGAC

miRBase

Precursor miRNA Sequence(5'-3')

GUAUCAUUGUUUUCGAACGAUGUCCUUGGAGAAAUAUGCGUCAAUGGAGUCCGUCUUCUUGAGAAGCAUUUUUGAGUGAGAAUGAUUCUCAUGAUGGAUAUGUCUUCAAGGACUUCUUUCAAACAAUGGUAC

miRBase

Precursor miRNA Structure(5'-3') 

            UC   C  U           A    G     AU      CG    -          
GUAUCAUUGUUU  GAA GA GUCCUUGGAGA AUAU CGUCA  GGAGUC  UCUU CUUGAGAAG 
||||||||||||  ||| || ||||||||||| |||| |||||  ||||||  |||| |||||||| C
CAUGGUAACAAA  CUU CU CAGGAACUUCU UAUA GUAGU  UCUUAG  AGAG GAGUUUUUU 
            --   U  U           G    G     AC      UA    U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR861-3p      GAUGGAUAUGUCUUCAAGGAC
aly-miR861-3p      GAUGGAUAUAUCUUCAAGAAC
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