TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR861-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

GAUGGAUAUAUCUUCAAGAAC

miRBase

Precursor miRNA Sequence(5'-3')

AAUGAUGUGUUUGGAGAAAUAUGCAUCAUGGAGUCUGUCUUCUUGAGAAGCAUUUUUGAGUGAGAAUAAUUCUCAUAAAUAAUGAUGGAUAUAUCUUCAAGAACUUCGUU

miRBase

Precursor miRNA Structure(5'-3') 

     U  G        A    G      GGAGUCUGUCUUCUUGAGAAGCAUU 
AAUGA GU UUUGGAGA AUAU CAUCAU                         U
||||| || |||||||| |||| ||||||                          
UUGCU CA GAACUUCU UAUA GUAGUA                         G
     U  A        A    G      AUAAAUACUCUUAAUAAGAGUGAGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR861-3p      GAUGGAUAUGUCUUCAAGGAC
aly-miR861-3p      GAUGGAUAUAUCUUCAAGAAC
                   ********* ******** **