TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR851-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGGGUGGCAAACAAAGACGAC

miRBase

Precursor miRNA Sequence(5'-3')

UUUUCUUUCUUUUCCUUUUCGUUUGAUUUUGGAAAGCAAGGGACUGUCGUCUCGGUUCGCGAUCCACAAGUAAUCUUUUGUGGAGAUUAUGAAAACAAUCAUCACGAGAGGCUACGUGUGGGUGGCAAACAAAGACGACAAUCCCUAUUCCAGUUCCAUCAGAACUUGAAAUAUCAUGUGAACU

miRBase

Precursor miRNA Structure(5'-3') 

UUUUCUUUCUUUUCCUUUUCGUUUGAUUUUGGAAAGCA     C        CG   C  G       A   A          A    AUG 
                                      AGGGA UGUCGUCU  GUU GC AUCCACA GUA UCUUUUGUGG GAUU   A
                                      ||||| ||||||||  ||| || ||||||| ||| |||||||||| ||||    
                                      UCCCU ACAGCAGA  CAA CG UGGGUGU CAU GGAGAGCACU CUAA   A
UCAAGUGUACUAUAAAGUUCAAGACUACCUUGACCUUA     A        AA   A  G       G   C          A    CAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR851-3p      UGUGGGUGGCAAACAAAGACGACA
ath-miR851-3p      --UGGGUGGCAAACAAAGACGAC-
                     *********************