TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR851-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UGUGGGUGGCAAACAAAGACGACA

miRBase

Precursor miRNA Sequence(5'-3')

AGGGACUGUGGUCUUUGUUUGCGACCCAUACGUAAUCUUUUGUGAGAGACUACGUGUGGGUGGCAAACAAAGACGACAAUCCCU

miRBase

Precursor miRNA Structure(5'-3') 

     C   G            G           A     U 
AGGGA UGU GUCUUUGUUUGC ACCCAUACGUA UCUUU G
||||| ||| |||||||||||| ||||||||||| |||||  
UCCCU ACA CAGAAACAAACG UGGGUGUGCAU AGAGA A
     A   G            G           C     G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR851-3p      UGUGGGUGGCAAACAAAGACGACA
ath-miR851-3p      --UGGGUGGCAAACAAAGACGAC-
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