TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR834

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGGUAGCAGUAGCGGUGGUAA

miRBase

Precursor miRNA Sequence(5'-3')

UACAACAUAUGUUACCAGUUGUGCUAUCAUUUUUUUCAGCGACAGCCAAAAUCACCACCGCUUCUGCUACGAACAUGUUAAGCCAUCCUUUUAACCGUUGCUGCCACCACUAUUACGGCCAUCACAAGAAAAUUCAUGCAAGUGGAAACGGUGAUAGUAGCAGCUGGUAUGACACGUUGGUAGCAGUAGCGGUGGUAAUGCCGAUAGCGUGAGCGGCAAUGGAAGCAUUGGUGGUGUCAGAAGCAGUCA

miRBase

Precursor miRNA Structure(5'-3') 

UACAACAUAUGUUACCAGUUGUGCUAUCAUUUUUUUCAGCGACAGCCAAAAUC         U       G   A     A    UCCUUUUAACCGUU     CACC        G ---    -CA  A  A 
                                                     ACCACCGCU CUGCUAC AAC UGUUA GCCA              GCUGC    ACUAUUAC G   CCAU   CA GA A
                                                     ||||||||| ||||||| ||| ||||| ||||              |||||    |||||||| |   ||||   || ||  
                                                     UGGUGGCGA GACGAUG UUG ACAGU UGGU              CGACG    UGAUAGUG C   GGUG   GU CU U
ACUGACGAAGACUGUGGUGGUUACGAAGGUAACGGCGAGUGCGAUAGCCGUAA         U       G   C     A    --------------     ---A        G AAA    AAC  A  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR834         UGGUAGCAGUAGCGGUGGUAA
aly-miR834-3p      UGGUAGCAGUAGCGGUGGUAA
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