TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR834-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UGGUAGCAGUAGCGGUGGUAA

miRBase

Precursor miRNA Sequence(5'-3')

UUACAGCGACAGCCAAAAUCACCACAGCUUCUGCUACGAACGUGUUAAGCCAUCCUUUUGACCAUUGCUGCACCACUAUUACGGCCAUCACAAGAAAAUCUAUGCAAGUGGAAACAGUGAUAGUAGCGGCUGGCUAAUGACACGUUGGUAGCAGUAGCGGUGGUAAUGUCGAUAGCGUGA

miRBase

Precursor miRNA Structure(5'-3') 

---UUACAG     GCCAAAAUC     A   U       G         --     UCCUUUUGACCAUU     ACC        ---GG    -CA  -     
         CGACA         ACCAC GCU CUGCUAC AACGUGUUA  AGCCA              GCUGC   ACUAUUAC     CCAU   CA AGAA 
         |||||         ||||| ||| ||||||| |||||||||  |||||              |||||   ||||||||     ||||   || ||| A
         GCUGU         UGGUG CGA GACGAUG UUGCACAGU  UCGGU              CGGCG   UGAUAGUG     GGUG   GU UCUC 
AGUGCGAUA     -------AA     G   U       G         AA     --------------     --A        ACAAA    AAC  A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR834         UGGUAGCAGUAGCGGUGGUAA
aly-miR834-3p      UGGUAGCAGUAGCGGUGGUAA
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