TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR833b

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGUUUGUUGACAUCGGUCUAG

miRBase

Precursor miRNA Sequence(5'-3')

CUUGUUUGUUGACAUCGGUCUAGCUCAAACCAUACAUAUUUGCAAAGAUGUUUUGGUUUGAACUAGACCGAGUACAACAAACAAA

miRBase

Precursor miRNA Structure(5'-3') 

C          -  A         C        UAC      G 
 UUGUUUGUUG AC UCGGUCUAG UCAAACCA   AUAUUU C
 |||||||||| || ||||||||| ||||||||   ||||||  
 AACAAACAAC UG AGCCAGAUC AGUUUGGU   UGUAGA A
A          A  -         A        -UU      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR833a-3p      UAGACCGAUGUCAACAAACAAG
aly-miR833-3p       UAGACCGAUGUCAACAAACAAG
ath-miR833b         -UGUUUGUUGACAUCGGUCUAG
                      *   * ** ** *   * **