TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR825

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UUCUCAAGAAGGUGCAUGAAC

miRBase

Precursor miRNA Sequence(5'-3')

CUUUCUAUAAUUACUUUUUGUAUAGAAUUCACUAGUUGAUUCCAUCGACUCGUUCAAGCACCAGCUCGAAGAAGCUUAGCUAAUUUAUCUUAGAAAAUAAUGAAAAAGCUAUGCUUCUCAAGAAGGUGCAUGAACAAGUUGAUGUAUAUUUUGAUGUGUAAAGACCAAAAUUGGAUCUCACAUGUG

miRBase

Precursor miRNA Structure(5'-3') 

CUUUCUAUAAUUACUUUUUGUAUAGAAUUCACUAGUUGAUUC        C     A     AG  C  A     U     AA     CUUA 
                                          CAUCGACU GUUCA GCACC  CU GA GAAGC UAGCU  UUUAU    G
                                          |||||||| ||||| |||||  || || ||||| |||||  |||||    A
                                          GUAGUUGA CAAGU CGUGG  GA CU CUUCG AUCGA  AAGUA    A
GUGUACACUCUAGGUUAAAACCAGAAAUGUGUAGUUUUAUAU        A     A     AA  A  -     U     AA     AUAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR825-3p      UUCUCGAGAAGGUGCAUGAAC
ath-miR825         UUCUCAAGAAGGUGCAUGAAC
cru-miR825         UUCUCGAGAAGGUGCAUGAGC
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