TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR825-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UUCUCGAGAAGGUGCAUGAAC

miRBase

Precursor miRNA Sequence(5'-3')

GGUAUAAUUCACUGAUUGAUUCCAUCAACUCGUUCAAGCACCAGCUCGAAGAAGCGUAGCUAAUUUAUCUUAGAAAAUCAUGGAUUUGAAAAAGCUACGCUUCUCGAGAAGGUGCAUGAACAAGUUGAUGCAUAUUUUGAUCUGCAAAGACC

miRBase

Precursor miRNA Structure(5'-3') 

   AUAAUUCACU      ---UUC        C     A     AG     A           AA   --    UAGA 
GGU          GAUUGA      CAUCAACU GUUCA GCACC  CUCGA GAAGCGUAGCU  UUU  AUCU    A
|||          ||||||      |||||||| ||||| |||||  ||||| |||||||||||  |||  ||||    A
CCA          CUAGUU      GUAGUUGA CAAGU CGUGG  GAGCU CUUCGCAUCGA  AAG  UAGG    C
   ---GAAACGU      UUAUAC        A     A     AA     -           AA   UU    UACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR825-3p      UUCUCGAGAAGGUGCAUGAAC
ath-miR825         UUCUCAAGAAGGUGCAUGAAC
cru-miR825         UUCUCGAGAAGGUGCAUGAGC
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