TarDB

Precursor miRNA Sequence(5'-3')

UAUCACCAUUUGUACUUGAGUUGUCUCUCAUGUCUAGACCAUUUGUGAGAAGGGAGUUUUUGUUUACACCAAUACCCCCCAGUCUCUAAAUUUGUAAGAAGUAUUAUGCUCAAUUAAGGAACAUAGCUAGUUCGACAUACCAUACUACCCUUUUUAAAACUAUCCUAUAUGUUUGAUGCUAGCAUAGCGUAAUUUUGUGUUCUCAUGGUGCAGCAGGGUUAGUUUAUUGUGUACCUCUAGAUAUAUAUUCUCUUGCUGCGUAGGGUUCCCAAGCUGCCAAAAACUUUUAAAAAUUAGUGAUCUGUUCCCCAAACCCCCAUUCAAUAAGAAAGGUCUACCUGUAGCUCACAGUCACAGCUAUUAGAGCUGUCCUUGCUUCUUUGGGUUUACUGUUUUAGUUAAUUAGUUACCCUAUGAAAGUCUGAUCCUUCAGAAGUUAGGUAUAGAAGUAAGUCGAUUAAGUUCAUUCAUGACUUUUCCAGAUGUUGCAUACAUAACUUUUUUUAUUUGUAUUCGAACUAGUCCAAGCCGAUUCUCAAAAUCAUAUAAAAUCAUUUACACCUUGGUCAUGGUAGCUAAGAAUAUUGUAUCUAAAAUUGGGGAGUGGGGAGAUGUUUGGUUAUAUUCCCUUCUCAUCGAUGGUCUAGAUGUGCGAGGUGACUCUCAUGGAGGUAAAGAACAAUGGUGAU

miRBase

Precursor miRNA Structure(5'-3')

U         U  A   -----------          U               U             UUUUGUUUAC     -  C -     G       A    UAAGA      --AU   --  --       AACAUAGCUAGUUCGACAUACCAUACUACCCUUUUUAAAACUAUCCUAUAUGUUUGAUGCUAGCAUAGCGUAAUUUUGUGUUCUCAUGGUGCAGCAGGGUUAGUUUAUUGUGUACCUCUAGAUAUAUAUUCUCUUGCUGCGUAGGGUUCCCAAGCUGCCAAAAACUUUUAAAAAUUAGUGAUCUGUUCCCCAAACCCCCAUUCAAUAAGAAAGGUCUAC 
 AUCACCAUU GU CUU           GAGUUGUCUC CAUGUCUAGACCAUU GUGAGAAGGGAGU          ACCAA UA C CCCCA UCUCUAA UUUG     AGUAUU    GCU  CA  AUUAAGG                                                                                                                                                                                                                           C
 ||||||||| || |||           |||||||||| ||||||||||||||| |||||||||||||          ||||| || | ||||| ||||||| ||||     ||||||    |||  ||  |||||||                                                                                                                                                                                                                           U
 UAGUGGUAA CA GAA           CUCAGUGGAG GUGUAGAUCUGGUAG UACUCUUCCCUUA          UGGUU GU G GGGGU AGGGGUU AAAU     UUAUAA    CGA  GU  UGGUUCC                                                                                                                                                                                                                           A
-         -  A   AUGGAGGUACU          C               C             -------UAU     U  A A     G       A    CUAUG      GAAU   UG  AC       ACAUUUACUAAAAUAUACUAAAACUCUUAGCCGAACCUGAUCAAGCUUAUGUUUAUUUUUUUCAAUACAUACGUUGUAGACCUUUUCAGUACUUACUUGAAUUAGCUGAAUGAAGAUAUGGAUUGAAGACUUCCUAGUCUGAAAGUAUCCCAUUGAUUAAUUGAUUUUGUCAUUUGGGUUUCUUCGUUCCUGUCGAGAUUAUCGACACUGACACUCGAU

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.