TarDB

Precursor miRNA Sequence(5'-3')

AGUUGUCUCUCAUGUCUAGACCAUUUGUGAGAAGGGAGUUUUUGUUUGCACCAAUACCCACCAAUCUCUAAGUUUGUAAGAAGUAUUAUGCUCAAUUAAGGAAAAUAGCUAGUUCAACUUACCACACUACCCUUUUACAAACUAUCCUAUAUGUUAGAUGCUAGCAUGGCGUAAUUUUGUGUUCUCAUUCUGCAGCAGGGUUAGUUUCUUGUGUACCUCUAGAUAUUUAUUCUCUUGCUGCGUAGGGUUCCCAAGCUGCCAAAAACUUUUCAAAAUUAGAGAUCUGUUCCCCACUAACCCCCAUCCAAUAAGGAAGGUCUACCUGUAUGUAGCUCACAGCUAUUAAAGCUGUGCUCGCGUCUUGGUUUUACUGUUUUAGUUACCCCAUGAAAUCUGAUCCUUCAGAAGUUAGGUAUAGAAGUAAGUCGAUUAAGUUCAUUCAUGACUUUUCCAGAUGUUGCACAGAUAACUUUUUUAUUUGUAUUAUAACUAGUCCAAGCCGAUUCUCGAAAUCAUAUAAAAUCAUUUACACCUUGGUCAUGGUAGCCAAGAAUUUGUAUCUUACACUAGGUUUCCUAAUAAAUAAAAAUGGGGAGUGGGGAGGUGUUUGGUUAUAUUCCCUUCUCAUCGAUGGUCUAGAUGUGCGAGGUGACU

miRBase

Precursor miRNA Structure(5'-3')

         U               U             UUUUGUUU     AAUACCCACCAAUCUCUAAGUUUGUAAGAAGUAUUAUGCUCAAUUAAGGAAAAUAGCUAGUUCAACUUACCACACUACCCUUUUACAAACUAUCCUAUAUGUUAGAUGCUAGCAUGGCGUAAUUUUGUGUUCUCAUUCUGCAGCAGGGUUAGUUUCUUGUGUACCUCUAGAUAUUUAUUCUCUUGCUGCGUAGGGUUCCCAAGCUGCCAAAAACUUUUCAAAAUUAGAGAUCUGUUCCCCACUAACCCCCAUCCAAUAAGGAAGGUCUACCUGU 
AGUUGUCUC CAUGUCUAGACCAUU GUGAGAAGGGAGU        GCACC                                                                                                                                                                                                                                                                                  A
||||||||| ||||||||||||||| |||||||||||||        |||||                                                                                                                                                                                                                                                                                   
UCAGUGGAG GUGUAGAUCUGGUAG UACUCUUCCCUUA        UGUGG                                                                                                                                                                                                                                                                                  U
         C               C             UAUUGGUU     AGGGGUGAGGGGUAAAAAUAAAUAAUCCUUUGGAUCACAUUCUAUGUUUAAGAACCGAUGGUACUGGUUCCACAUUUACUAAAAUAUACUAAAGCUCUUAGCCGAACCUGAUCAAUAUUAUGUUUAUUUUUUCAAUAGACACGUUGUAGACCUUUUCAGUACUUACUUGAAUUAGCUGAAUGAAGAUAUGGAUUGAAGACUUCCUAGUCUAAAGUACCCCAUUGAUUUUGUCAUUUUGGUUCUGCGCUCGUGUCGAAAUUAUCGACACUCGAUG

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.