TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR781a

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UUAGAGUUUUCUGGAUACUUA

miRBase

Precursor miRNA Sequence(5'-3')

UCAAAUUAGAGUUUUCUGGAUACUUAUUAGUUACUAACAAAGAGAGGGCUUCUUCGAUAUUAACUUUUAAGUAUCCAGAAAACUCUAAAUUUGA

miRBase

Precursor miRNA Structure(5'-3') 

       -                   UU     C  A A     A 
UCAAAUU AGAGUUUUCUGGAUACUUA  AGUUA UA C AAGAG G
||||||| |||||||||||||||||||  ||||| || | ||||| G
AGUUUAA UCUCAAAAGACCUAUGAAU  UCAAU AU G UUCUU U
       A                   UU     U  A C     C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR781a        UUAGAGUUUUCUGGAUACUUA----
aly-miR781-5p      UUAGAGUUUUCUGGAUACUUA----
ath-miR781b        UUAGAGUUUUCUGGAUACUUA----
aly-miR781-3p      ----AGUAUCCAGAAAACUCUAAUU
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