TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR781-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

AGUAUCCAGAAAACUCUAAUU

miRBase

Precursor miRNA Sequence(5'-3')

GUUUCAAUUUAGAGUUUUCUGGAUACUUAAUAGUUACUAACAAAGAAAGGGUUUCUUCUAUAUUAACUUCUAAGUAUCCAGAAAACUCUAAUUUGAAAC

miRBase

Precursor miRNA Structure(5'-3') 

       U                     AU     C  ACA        
GUUUCAA UUAGAGUUUUCUGGAUACUUA  AGUUA UA   AAGAAAG 
||||||| |||||||||||||||||||||  ||||| ||   |||||| G
CAAAGUU AAUCUCAAAAGACCUAUGAAU  UCAAU AU   UUCUUUU 
       U                     CU     U  AUC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR781a        UUAGAGUUUUCUGGAUACUUA----
aly-miR781-5p      UUAGAGUUUUCUGGAUACUUA----
ath-miR781b        UUAGAGUUUUCUGGAUACUUA----
aly-miR781-3p      ----AGUAUCCAGAAAACUCUAAUU
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