TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR4245

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

ACAAAGUUUUAUACUGACAAU

miRBase

Precursor miRNA Sequence(5'-3')

GAAUUGUCAGUAUAAAUCUUUGAUCUGAUACUCUAUUAGUUAGUAUGUGAAUUUCUUUUUAACAAUUUUCUUAUUCAUGCGAGAGCUAUCAAUAAGUAUUAGAACAAAGUUUUAUACUGACAAUUCAAUCUUACCUGAUUUUCAAAA

miRBase

Precursor miRNA Structure(5'-3') 

---------------------                U     A         --CUAU     AGUAU      UUCUUUUUA 
                     GAAUUGUCAGUAUAAA CUUUG UCUGAUACU      UAGUU     GUGAAU         A
                     |||||||||||||||| ||||| |||||||||      |||||     ||||||          
                     CUUAACAGUCAUAUUU GAAAC AGAUUAUGA      AUCGA     UACUUA         A
AAAACUUUUAGUCCAUUCUAA                U     A         AUAACU     GAGCG      UUCUUUUAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR4245      ACAAAGUUUUAUACUGACAAU
ath-miR4245      ACAAAGUUUUAUACUGACAAU
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