TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR4245

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

ACAAAGUUUUAUACUGACAAU

miRBase

Precursor miRNA Sequence(5'-3')

AGCCCAAUUUGAAGAUGAAUUGUCAGUAUAAAUCUUUGAUCCAAUAUACUUUUGAUUAGUAGAUGAGUUUUUUUUGACAAUUAUCAAUUAUAUUAAAGAGUGAUCAAUUAGUAUUGGAACAAAGUUUUAUACUGACAAUUCGAUCUUAAAAAGCAGAAG

miRBase

Precursor miRNA Structure(5'-3') 

-AGCCCAAUUUG     -                U     A        ACUU       G AGA   GUUUUUU    CA 
            AAGAU GAAUUGUCAGUAUAAA CUUUG UCCAAUAU    UUGAUUA U   UGA       UUGA  A
            ||||| |||||||||||||||| ||||| ||||||||    ||||||| |   |||       ||||   
            UUCUA CUUAACAGUCAUAUUU GAAAC AGGUUAUG    AACUAGU A   AUU       AACU  A
GAAGACGAAAAA     G                U     A        -AUU       G GAA   --AUAUU    AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR4245      ACAAAGUUUUAUACUGACAAU
ath-miR4245      ACAAAGUUUUAUACUGACAAU
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