TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR403-5p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UGUUUUGUGCUUGAAUCUAAUU

miRBase

Precursor miRNA Sequence(5'-3')

UUGUCAUUAGAAGAGUCGUAUUACAUGUUUUGUGCUUGAAUCUAAUUCAACAGGCUUUAUGUAAGAGAUUCUUUAACAAUUCCUAUAAUCUUUGUUGUUGGAUUAGAUUCACGCACAAACUCGUAAUCUGUCUUU

miRBase

Precursor miRNA Structure(5'-3') 

UUGUCAUUAGA    U  U     AU    U    U                 GCUUUAUGUAAGAGAUUCU 
           AGAG CG AUUAC  GUUU GUGC UGAAUCUAAUUCAACAG                   U
           |||| || |||||  |||| |||| |||||||||||||||||                   U
           UUUC GU UAAUG  CAAA CACG ACUUAGAUUAGGUUGUU                   C
-----------    U  C     CU    -    C                 GUUUCUAAUAUCCUUAACA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR403a-5p      UGUUUUGUGCGUGACUCUAAUU
aly-miR403b-5p      UGUUUUGUGCGUGACUCUAAUU
ath-miR403-5p       UGUUUUGUGCUUGAAUCUAAUU
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