TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR403a-5p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UGUUUUGUGCGUGACUCUAAUU

miRBase

Precursor miRNA Sequence(5'-3')

GAAGAGUCGUAUUACAUGUUUUGUGCGUGACUCUAAUUUAACAGGCUUAUGUUUGAGAUUUUUUUGACAAAUCCGGAUUUUGCUGUUGGAUUAGAUUCACGCACAAACUCGUAAUCUGUCUUUUC

miRBase

Precursor miRNA Structure(5'-3') 

      U  U     AU    U        C             G UUAU     A     UU 
GAAGAG CG AUUAC  GUUU GUGCGUGA UCUAAUUUAACAG C    GUUUG GAUUU  U
|||||| || |||||  |||| |||||||| ||||||||||||| |    ||||| |||||  U
CUUUUC GU UAAUG  CAAA CACGCACU AGAUUAGGUUGUC G    UAGGC CUAAA  C
      U  C     CU    -        U             - -UUU     -     CA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR403a-5p      UGUUUUGUGCGUGACUCUAAUU
aly-miR403b-5p      UGUUUUGUGCGUGACUCUAAUU
ath-miR403-5p       UGUUUUGUGCUUGAAUCUAAUU
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