TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR168b-3p

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

CCCGUCUUGUAUCAACUGAAU

miRBase

Precursor miRNA Sequence(5'-3')

UUACCGGCGGUCUCGGAUUCGCUUGGUGCAGGUCGGGAACUGAUUGGCUGACACCGACACGUGUCUUGUCAUGGUUGGUUUGUGAGCUCCCGUCUUGUAUCAACUGAAUCGGAGUCCGAGGUGA

miRBase

Precursor miRNA Structure(5'-3') 

     GG   U   G      C          U     ACUGAUUG   G  --      A    UC 
UUACC  CGG CUC GAUUCG UUGGUGCAGG CGGGA        GCU AC  ACCGAC CGUG  U
|||||  ||| ||| |||||| |||||||||| |||||        ||| ||  |||||| ||||   
AGUGG  GCC GAG CUAAGU AACUAUGUUC GCCCU        CGA UG  UGGUUG GUAC  U
     -A   U   G      C          U     --------   G  UU      -    UG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR168b-3p      CCCGUCUUGUAUCAACUGAAU
aly-miR168b-3p      CCCGUCUUGUAUCAACUGAAU
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