TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR168b-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

CCCGUCUUGUAUCAACUGAAU

miRBase

Precursor miRNA Sequence(5'-3')

AGAGAGAAAUACGAUGAUUUAAAGUUACCGGCGGUCUCGGAUUCGCUUGGUGCAGGUCGGGAACUGAUUAGCUGACAAUUACACGUGUGUUGUCAUGGUUGGUUUGUGAGAUCCCGUCUUGUAUCAACUGAAUCGGAGUCCGAGGUGAAAAAAAUAAGGAUCUUACUUUCAGAUCU

miRBase

Precursor miRNA Structure(5'-3') 

-----A     AAAUACGAUG    AAAG     GG   U   G      C          U     ----  U        --      U  A 
      GAGAG          AUUU    UUACC  CGG CUC GAUUCG UUGGUGCAGG CGGGA    AC GAUUAGCU  GACAAU AC C
      |||||          ||||    |||||  ||| ||| |||||| |||||||||| |||||    || ||||||||  |||||| ||  
      CUUUC          UAAA    AGUGG  GCC GAG CUAAGU AACUAUGUUC GCCCU    UG UUGGUUGG  CUGUUG UG G
UCUAGA     AUUCUAGGAA    -AAA     -A   U   G      C          U     AGAG  U        UA      -  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR168b-3p      CCCGUCUUGUAUCAACUGAAU
aly-miR168b-3p      CCCGUCUUGUAUCAACUGAAU
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