TarDB

Precursor miRNA Sequence(5'-3')

GCAUAUGUAAGAGGUGAGACUGUUGGCUUUAAUUCCACCAAUAACUUCAGCUGCGCCAUGAAGAGUAGACAGAAGAUUAUGGCGGUUGAGGGUUUCUUCGUAGAGGUUGAUCGAUCCUUAAUGUCCUGUGGAAUUUAAGUUUCCGAAACUGUUUAUGAGGACAUACAAGAUCGUUCAGUGUCCAAGAAGAAGCCUGAGCCGCUAUAAUCAUCGGUCUAAUCUCUUUAGCAGAUGAUGUUAUUUGUGGUAUAAAACCAACAGUUUUAUCACUCUCACAUAGU

miRBase

Precursor miRNA Structure(5'-3')

GCA     A    --             C    AUU    C      U   G    GCCA       --     A  A             GA          GUA  G     U     CUUA       GUG    UUA       
   UAUGU AGAG  GUGAGACUGUUGG UUUA   CCAC AAUAAC UCA CUGC    UGAAGAG  UAGAC GA GAUUAUGGCGGUU  GGGUUUCUUC   GA GUUGA CGAUC    AUGUCCU   GAAU   AGUUUC 
   ||||| ||||  ||||||||||||| ||||   |||| |||||| ||| ||||    |||||||  ||||| || |||||||||||||  ||||||||||   || ||||| |||||    |||||||   ||||   ||||| C
   AUACA UCUC  UAUUUUGACAACC AAAU   GGUG UUAUUG AGU GACG    AUUUCUC  AUCUG CU CUAAUAUCGCCGA  UCCGAAGAAG   CU UGACU GCUAG    UACAGGA   UUUG   UCAAAA 
-UG     C    AC             A    -AU    U      U   A    ----       UA     G  A             -G          AAC  G     U     AACA       GUA    ---

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.