TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR847-3p

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

UCACUCCUCUUCUUCAUGAUG

miRBase

Precursor miRNA Sequence(5'-3')

GAAUAAAAGUCUCACAUCUUGAUGAAGAGGAAUGGAAAGCCGAGACCCAAAUCAAAACAGAGGCGUCCCCCAAUUAAAAUUGGUAAGUGAUAUCUAUGUCUUGGUUUCGAUCUUGAUCUCGGUCUUUCACUCCUCUUCUUCAUGAUGUAAGAAUUUGUUAUUC

miRBase

Precursor miRNA Structure(5'-3') 

      --AAG   C     U   U        A     A       CC   -   A    A       ---------CCC     U 
GAAUAA     UCU ACAUC UGA GAAGAGGA UGGAA GCCGAGA  CAA AUC AAAC GAGGCGU            CCAAU A
||||||     ||| ||||| ||| |||||||| ||||| |||||||  ||| ||| |||| |||||||            |||||  
CUUAUU     AGA UGUAG ACU CUUCUCCU ACUUU UGGCUCU  GUU UAG UUUG UUCUGUA            GGUUA A
      GUUUA   A     U   U        C     C       -A   C   C    G       UCUAUAGUGAAU     A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR847         UCACUCCUCUUCUUCUUGAUG
aly-miR847-3p      UCACUCCUCUUCUUCAUGAUG
                   *************** *****