TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

aly-miR774a-5p.1

Organism

Arabidopsis lyrata

Species

Mature miRNA Sequence(5'-3')

CGAGACGAAGAUAUGGGUGAC

miRBase

Precursor miRNA Sequence(5'-3')

GCGUUGUUCAUUUGGAUUCAUAUUCGAGACGAAGAUAUGGGUGACUAAUACUUAAGAUUUUGGUCAAUUUAAAUUACCAAUCUAAUUAUUUGUUACCCAUAUCUCCAUCUCCAAUUUAAUCUCUUAAAAGUCGU

miRBase

Precursor miRNA Structure(5'-3') 

   UUGUUCAUUU     CAU   C    C A             U    C   A   UU    C   U 
GCG          GGAUU   AUU GAGA G AGAUAUGGGUGAC AAUA UUA GAU  UGGU AAU U
|||          |||||   ||| |||| | ||||||||||||| |||| ||| |||  |||| |||  
UGC          UCUAA   UAA CUCU C UCUAUACCCAUUG UUAU AAU CUA  ACCA UUA A
   -UGAAAAUUC     -UU   C    A C             U    U   -   --    -   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

aly-miR774a-5p.1      CGAGACGAAGAUAUGGGUGAC
ath-miR774b-5p        UGAGAUGAAGAUAUGGGUGAU
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