TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



zma-miR396b-3p
AGAUGGCCUUCUUUGUGAUCUUCCACAGCUUUCUUGAACUGCAUCUCUCAGAGGAGCGGCAGCUUCAACUCCUCCACCCGCAUCAGCAGGUGCAUGCAGUUCAAUAAAGCUGUGGGAAACUGCAGAGAGAGGCCAG

miRBase
AGA      -        AUC            C           CUCUCAGAGGAGCGGCAGCUUCA 
   UGGCCU UCUUUGUG   UUCCACAGCUUU UUGAACUGCAU                       A
   |||||| ||||||||   |||||||||||| |||||||||||                       C
   ACCGGA AGAGACGU   AGGGUGUCGAAA AACUUGACGUA                       C
--G      G        CAA            U           CGUGGACGACUACGCCCACCUCC 

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mac-miR396d                  ---UUCCAC-AGCUUUCUUGAACGG-
mac-miR396o                  ---UUCCAC-AGCUUUCUUGAACGG-
spo-miR396e                  ---UUCCAC-AGCUUUCUUGAACGG-
spo-miR396c                  ---UUCCAC-GGCUUUCUUGAACGG-
spo-miR396d                  ---UUCCAC-GGCUUUCUUGAACGG-
osa-miR396g                  ----UCCACAGGCUUUCUUGAACGG-
osa-miR396h                  ----UCCACAGGCUUUCUUGAACGG-
osa-miR396d                  ----UCCACAGGCUUUCUUGAACGG-
sit-miR396e                  ----UCCACAGGCUUUCUUGAACGA-
ppe-miR396a                  ---UUCCAC-AGCUUUCUUGAACGU-
mdm-miR396a                  ---UUCCAC-AGCUUUCUUGAACAG-
vvi-miR396b                  ---UUCCAC-AGCUUUCUUGAACU--
vvi-miR396a                  ---UUCCAC-AGCUUUCUUGAACUA-
bra-miR396a                  ---UUCCAC-AGCUUUCUUGAACUU-
cru-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
esa-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
mac-miR396a                  ---UUCCAC-AGCUUUCUUGAACUU-
mac-miR396h                  ---UUCCAC-AGCUUUCUUGAACUU-
mac-miR396i                  ---UUCCAC-AGCUUUCUUGAACUU-
mac-miR396l                  ---UUCCAC-AGCUUUCUUGAACUU-
mac-miR396m                  ---UUCCAC-AGCUUUCUUGAACUU-
pha-miR396a                  ---UUCCAC-AGCUUUCUUGAACUU-
pvi-miR396d                  ---UUCCAC-AGCUUUCUUGAACUU-
pvi-miR396e                  ---UUCCAC-AGCUUUCUUGAACUU-
sit-miR396a                  ---UUCCAC-AGCUUUCUUGAACUU-
zos-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
ath-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUU-
osa-miR396c-5p               ---UUCCAC-AGCUUUCUUGAACUU-
sbi-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
gma-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUU-
ptc-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
ptc-miR396d                  ---UUCCAC-AGCUUUCUUGAACUU-
ptc-miR396e-5p               ---UUCCAC-AGCUUUCUUGAACUU-
mtr-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUU-
gma-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
zma-miR396e-5p               ---UUCCAC-AGCUUUCUUGAACUU-
zma-miR396f-5p               ---UUCCAC-AGCUUUCUUGAACUU-
ccl-miR396                   ---UUCCAC-AGCUUUCUUGAACUU-
rco-miR396                   ---UUCCAC-AGCUUUCUUGAACUU-
aly-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUU-
tcc-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
tcc-miR396e                  ---UUCCAC-AGCUUUCUUGAACUU-
bdi-miR396e-5p               ---UUCCAC-AGCUUUCUUGAACUU-
gma-miR396k-5p               ---UUCCAC-AGCUUUCUUGAACUU-
lus-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
mdm-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
mdm-miR396d                  ---UUCCAC-AGCUUUCUUGAACUU-
mdm-miR396e                  ---UUCCAC-AGCUUUCUUGAACUU-
mes-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
mes-miR396d                  ---UUCCAC-AGCUUUCUUGAACUU-
mes-miR396e                  ---UUCCAC-AGCUUUCUUGAACUU-
mes-miR396f                  ---UUCCAC-AGCUUUCUUGAACUU-
stu-miR396-5p                ---UUCCAC-AGCUUUCUUGAACUU-
ppe-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
lus-miR396e                  ---UUCCAC-AGCUUUCUUGAACUU-
atr-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
atr-miR396c                  ---UUCCAC-AGCUUUCUUGAACUU-
atr-miR396e                  ---UUCCAC-AGCUUUCUUGAACUU-
sly-miR396b                  ---UUCCAC-AGCUUUCUUGAACUU-
fve-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUU-
csi-miR396f-5p               ---UUCCAC-AGCUUUCUUGAACUU-
mac-miR396t                  GUUUUCCAC-AGCUUUCUUGAACUG-
esa-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
mac-miR396g                  ---UUCCAC-AGCUUUCUUGAACUG-
mac-miR396n                  ---UUCCAC-AGCUUUCUUGAACUG-
pvi-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
spo-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
osa-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUG-
zma-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUG-
mtr-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUG-
csi-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
bdi-miR396d-5p               ---UUCCAC-AGCUUUCUUGAACUG-
lus-miR396c                  ---UUCCAC-AGCUUUCUUGAACUG-
cpa-miR396                   ---UUCCAC-AGCUUUCUUGAACUG-
fve-miR396d                  ---UUCCAC-AGCUUUCUUGAACUG-
cru-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
mac-miR396u                  GUCUUCCAC-AGCUUUCUUGAACUG-
mac-miR396f                  ---UUCCAC-AGCUUUCUUGAACUG-
mac-miR396j                  ---UUCCAC-AGCUUUCUUGAACUG-
pvi-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
sit-miR396d                  ---UUCCAC-AGCUUUCUUGAACUG-
osa-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
gma-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
ptc-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
aly-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
tcc-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
lus-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
mes-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
fve-miR396c-5p               ---UUCCAC-AGCUUUCUUGAACUG-
bra-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
gma-miR396e                  ---UUCCAC-AGCUUUCUUGAACUGU
mac-miR396e                  ---UUCCAC-AGCUUUCUUGAACUG-
pha-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
pvi-miR396c                  ---UUCCAC-AGCUUUCUUGAACUG-
spo-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
sbi-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
zma-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
vvi-miR396d                  ---UUCCAC-AGCUUUCUUGAACUG-
csi-miR396b-5p               ---UUCCAC-AGCUUUCUUGAACUG-
bdi-miR396c-5p               ---UUCCAC-AGCUUUCUUGAACUG-
mdm-miR396b                  ---UUCCAC-AGCUUUCUUGAACUG-
sly-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
fve-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
mes-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
gma-miR396i-5p               ---UUCCAC-AGCUUUCUUGAACUG-
tcc-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
vvi-miR396c                  ---UUCCAC-AGCUUUCUUGAACUG-
ptc-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
sbi-miR396a                  ---UUCCAC-AGCUUUCUUGAACUG-
ath-miR396a-5p               ---UUCCAC-AGCUUUCUUGAACUG-
sit-miR396c                  ---UUCCAC-AGCUUUCUUGAACUG-
pha-miR396d                  ---UUCCAC-AGCUUUCUUGAACUG-
zma-miR396g-5p               ---UCCCAC-AGCUUUAUUGAACUG-
zma-miR396h                  ---UCCCAC-AGCUUUAUUGAACUG-
lus-miR396d                  ---UCCCAC-AGCUUUAUUGAACUG-
mac-miR396c                  ----UCCACAGGCUUUCUUGAACUG-
pha-miR396c                  ----UCCACAGGCUUUCUUGAACUG-
pha-miR396e                  ----UCCACAGGCUUUCUUGAACUG-
pvi-miR396f                  ----UCCACAGGCUUUCUUGAACUG-
pvi-miR396g                  ----UCCACAGGCUUUCUUGAACUG-
sit-miR396b                  ----UCCACAGGCUUUCUUGAACUG-
osa-miR396e-5p               ----UCCACAGGCUUUCUUGAACUG-
bdi-miR396a-5p               ----UCCACAGGCUUUCUUGAACUG-
bdi-miR396b-5p               ----UCCACAGGCUUUCUUGAACUG-
osa-miR396f-5p               --UCUCCACAGGCUUUCUUGAACU--
mac-miR396p                  ---CUCCACAGGCUUUCUUGAACU--
mac-miR396q                  ---CUCCACAGGCUUUCUUGAACU--
atr-miR396d                  ---CUCCAC-GGCUUUCUUGAACUU-
sbi-miR396d                  ---CUCCACAGGCUUUCUUGAACUG-
gma-miR396h                  ----UCCAC-AGCUUUCUUGAACUG-
zma-miR396d                  ---UUCCACAGGCUUUCUUGAACUG-
dca-miR396-b2.0r1-8101       ---UUCCAC-GGCUUUCUUGAACUG-
dca-miR396-b2.0r1-19325      ---UUCCAC-GGCUUUCUUGAACUG-
mac-miR396b                  ---UUCCAC-GGCUUUCUUGAACUG-
mac-miR396k                  ---UUCCAC-GGCUUUCUUGAACUG-
ptc-miR396f                  ---UUCCAC-GGCUUUCUUGAACUG-
mdm-miR396f                  ---UUCCAC-GGCUUUCUUGAACUG-
mdm-miR396g                  ---UUCCAC-GGCUUUCUUGAACUG-
csi-miR396e-5p               ---UUCCAC-GGCUUUCUUGAACU--
zos-miR396a                  ---UUCCAC-GGCUUUCUUGAACUA-
dca-miR396-b2.0r1-15435      ---UUCCAC-GGCUUUCUUGAACUU-
spo-miR396f                  ---UUCCAC-GGCUUUCUUGAACUU-
ptc-miR396g-5p               ---UUCCAC-GGCUUUCUUGAACUU-
tcc-miR396d                  ---UUCCAC-GGCUUUCUUGAACUU-
zma-miR396c                  ---UUCCACAGGCUUUCUUGAACUG-
mac-miR396s                  -GAUUCCACAGGCUUUCUUGAAC---
atr-miR396a                  ----UCCACAGGCUUUCUUGAACAU-
mac-miR396r                  -CUUUCCACAGGCUUUCUUGAAC---
fve-miR396e                  ---UUCCACAGGCUUUCUUGAACU--
sbi-miR396e                  ---UUCCACAGGCUUUCUUGAACUG-
csi-miR396a-3p               ---AUUCAAGAAAGCUGUGGAAAA--
gma-miR396j                  ---AUUCAAGAUAGCUGUGGAAAA--
zma-miR396g-3p               ---GUUCAAGAAAGCUGUGGAAGA--
ath-miR396b-3p               ---GCUCAAGAAAGCUGUGGGAAA--
aly-miR396b-3p               ---GCUCAAGAAAGCUGUGGGAAA--
gma-miR396b-3p               ---GCUCAAGAAAGCUGUGGGAGA--
mtr-miR396a-3p               ---GCUCAAGAAAGCUGUGGGAGA--
gma-miR396k-3p               ---GCUCAAGAAAGCUGUGGGAGA--
csi-miR396f-3p               ---GCUCAAGAAAGCUGUGGGAGA--
fve-miR396b-3p               ---GCUCAAGAAAGCUGUGGGACA--
zma-miR396b-3p               ---GUUCAAUAAAGCUGUGGGAAA--
zma-miR396a-3p               ---GUUCAAUAAAGCUGUGGGAAA--
bdi-miR396d-3p               ---GUUCAAUAAAGCUGUGGGAAA--
bdi-miR396c-3p               ---GUUCAAUAAAGCUGUGGGAAA--
osa-miR396a-3p               ---GUUCAAUAAAGCUGUGGGAA---
osa-miR396b-3p               ---GUUCAAUAAAGCUGUGGGAA---
ath-miR396a-3p               ---GUUCAAUAAAGCUGUGGGAAG--
mtr-miR396b-3p               ---GUUCAAUAAAGCUGUGGGAAG--
aly-miR396a-3p               ---GUUCAAUAAAGCUGUGGGAAG--
csi-miR396b-3p               ---GUUCAAUAAAGCUGUGGGAAG--
gma-miR396i-3p               ---GUUCAAUAAAGCUGUGGGAAG--
sly-miR396a-3p               ---GUUCAAUAAAGCUGUGGGAAG--
fve-miR396a-3p               ---GUUCAAUAAAGCUGUGGGAAG--
fve-miR396c-3p               ---GUUCAAUAAAGCUGUGGGAAG--
gma-miR396a-3p               ----UUCAAUAAAGCUGUGGGAAG--
osa-miR396c-3p               ---GGUCAAGAAAGCUGUGGGAAG--
zma-miR396f-3p               ---GGUCAAGAAAGCUGUGGGAAG--
bdi-miR396e-3p               ---GGUCAAGAAAGCUGUGGGAAG--
stu-miR396-3p                ---GUCCAAGAAAGCUGUGGGAAA--
csi-miR396c                  ----UUCAAGAAAUCUGUGGGAAG--
csi-miR396d-3p               ----UUCAAGAAAUCUGUGGGAAG--
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