TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR2275d-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

AGAGUUGGAGGAAAGAAAACU

miRBase

Precursor miRNA Sequence(5'-3')

GUCAGGCACUAAAAGUGAGAGUUGGAGGAAAGAAAACUAAUCGGCUAUCAGAUUCUGCAAUGGCUUGAUGCAUAAACAUGAUUGCCGUUCCGUUUGUUUUCCUCUAAUAUCUCACCUUCA

miRBase

Precursor miRNA Structure(5'-3') 

GUCAGGCACUAAAA      -            A    UAAU    U    -GAUUC    AUG 
              GUGAGA GUUGGAGGAAAG AAAC    CGGC AUCA      UGCA   G
              |||||| |||||||||||| ||||    |||| ||||      ||||   C
              CACUCU UAAUCUCCUUUU UUUG    GCCG UAGU      ACGU   G
---------ACUUC      A            G    CCUU    U    ACAAAU    AGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR2275a-5p      AGAGUUGGAGGAAAGCAAACC--
zma-miR2275d-5p      AGAGUUGGAGGAAAGAAAACU--
osa-miR2275c         AGAAUUGGAGGAAAACAAACUGA
                     *** **********  ****