TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR169p-3p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GGCAAGUCAUCUGGGGCUACG

miRBase

Precursor miRNA Sequence(5'-3')

GUAGCCAAGGAUGACUUGCCGGCAUUAUAUUUCUUGGCCCGCCGGCAAGUCAUCUGGGGCUACGC

miRBase

Precursor miRNA Structure(5'-3') 

--      AA               AUUA  U 
  GUAGCC  GGAUGACUUGCCGGC    UA U
  ||||||  |||||||||||||||    || U
  CAUCGG  UCUACUGAACGGCCG    GU U
CG      GG               CCCG  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR169p-3p      GGCAAGUCAUCUGGGGCUACG
aly-miR169c-3p      GGCAAGUCAUCUCUGGCUAUG
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