TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

zma-miR166n-5p

Organism

Zea mays

Species

Mature miRNA Sequence(5'-3')

GGAUUGUUGUCUGGCUCGGUG

miRBase

Precursor miRNA Sequence(5'-3')

GGGAUUGUUGUCUGGCUCGGUGUCUCCGGUCGAGAYGGCCUUGCCGGCGCCGGAGCUGUCGUCGACCGGAGAUCUCGGACCAGGCUUCAAUCCCUU

miRBase

Precursor miRNA Structure(5'-3') 

--       UU      C    U            -  Y   -  U  C 
  GGGAUUG  GUCUGG UCGG GUCUCCGGUCGA GA GGC CU GC G
  |||||||  |||||| |||| |||||||||||| || ||| || ||  
  CCCUAAC  CGGACC GGCU UAGAGGCCAGCU CU UCG GG CG G
UU       UU      A    C            G  G   A  C  C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

zma-miR166n-5p      GGAUUGUUGUCUGGCUCGGUG
csi-miR166f-5p      GGACUGUUGUCUGGCUCGAUG
bdi-miR166h-5p      GGUUUGUUGUCUGGCUCGGGG
                    **  **************  *