TarDB

Precursor miRNA Sequence(5'-3')

UUUCACUUGAUUAGUUCCUUCAUGAGUUAUUGCAAGUAAUCUCCAAAUUUCCUUAGCGGAUUUACAUUGACAUAUUCUAUUAUAUUCAUUCCUAUCCAUAGCACAUUGCAAAGUAAAAACGACUUUAGCAUUUAAUUGAAAAUUUCUUCUAUCAAGCUCAUUCCAUUCUUGCUUGGGUUUUGGAACCAAAAUUCCAUCAACUAAUUUAGUGGGUAAAGUUGGGCCAUCUUCAAUGGCAUCCCAUACAUCUAAAUCAGUUGAUUGUAAGUACCAAGUCAUUCUAGCUUUCCAAUAGGGAUAGUCGGUUCCCGUAAAGAAUGGAGCUCUAUGUUUUGAACAAUUUUCAGUUUGAGAUGAGCUUGAUGGAAUAGCCAUUUUCCUCUUAGAUGAUUAAGUCUUAAGCAAGAGGUCUAGCUCUGAUACCAAUUGAUAAAACAAAGGC

miRBase

Precursor miRNA Structure(5'-3')

UUUCACUUGAUUAGUUCCUUCAUGAGUUAUUGCAAGUAAUCUCCAAAUUUCCUUAGCGGAUUUACAUUGACAUAUUCUAUUAUAUUCAUUCCUAUCCAUAGCACAUUGCAAAGUAAAAACGACUUUAGCAUUUAAUUGAAAAUUUCUUCUAUCAAGCUCAUUCCAUUCUUGCUUGGGUUUUGGAACCAAAAUUCC       A      -----    UAAAGUUGG     C 
                                                                                                                                                                                                   AUCAACU AUUUAG     UGGG         GCCAU U
                                                                                                                                                                                                   ||||||| ||||||     ||||         ||||| U
                                                                                                                                                                                                   UAGUUGA UAAAUC     ACCC         CGGUA A
---------------CGGAAACAAAAUAGUUAACCAUAGUCUCGAUCUGGAGAACGAAUUCUGAAUUAGUAGAUUCUCCUUUUACCGAUAAGGUAGUUCGAGUAGAGUUUGACUUUUAACAAGUUUUGUAUCUCGAGGUAAGAAAUGCCCUUGGCUGAUAGGGAUAACCUUUCGAUCUUACUGAACCAUGAAUGU       C      UACAU    -------UA     A

vvi-miR845a UAGCUCUGAUACCAAUU-GAUA---- vvi-miR845b UAGCUCUGAUACCAAUU-GAUA---- bra-miR845 CGGCUCUGAUACCAAUU-GAUG---- esa-miR845 CGGCUCUGAUACCAAUU-GAUG---- ath-miR845a CGGCUCUGAUACCAAUU-GAUG---- vvi-miR845c AGGCUCUGAUACCAAUU-GAUG---- vvi-miR845d UGGCUCUGAUACCAAUU-GAUG---- vvi-miR845e UGGCUCUGAUACCAAUU-GAUG---- aly-miR845b-3p UCGCUCUGAUACCAAAU-GAUG---- ath-miR845b UCGCUCUGAUACCAAAUUGAUG---- ath-miR829-3p.1 -AGCUCUGAUACCAAAU-GAUGGAAU bdi-miR845 -UGCUCUGAUACCAAUU-GUUGG--- ************* * * *

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.