TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

vvi-miR3627-5p

Organism

Vitis vinifera

Species

Mature miRNA Sequence(5'-3')

UUGUCGCAGGAGAGACGGCACU

miRBase

Precursor miRNA Sequence(5'-3')

GAAGGAAAGCGAGAAAGAAAGAGGGGUUGGGGGUUUCUUGUCGCAGGAGAGACGGCACUUGCUCUUGUGUAGCAAAUUGCAAGCGGCAAUCGCCGCUCUCCUGUGACAAGAUACCCUUCAGCUUCUUUCCUACAUUCUUCGCCCUAC

miRBase

Precursor miRNA Structure(5'-3') 

GA   AAA    -   ---  AA           -    U                A    AC     -      UAG 
  AGG   GCGA GAA   AG  AGAGGGGUUGG GGGU UCUUGUCGCAGGAGAG CGGC  UUGCU CUUGUG   C
  |||   |||| |||   ||  ||||||||||| |||| |||||||||||||||| ||||  ||||| ||||||    
  UCC   CGCU CUU   UC  UUUCUUCGACU CCCA AGAACAGUGUCCUCUC GCCG  AACGG GAACGU   A
CA   ---    U   ACA  -C           U    U                -    CU     C      UAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR3627-5p      UUGUCGCAGGAGAGACGGCACU-
gma-miR5786         -UGUCGCAGGAUAGAGGGCACU-
ptc-miR3627b        -UGUCGCAGGAGAGAUGGCGCUA
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