TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

vca-miR5658

Organism

Volvox carteri

Species

Mature miRNA Sequence(5'-3')

UUUCAUCAUCAUCAUCAUCA

PmiREN

Precursor miRNA Sequence(5'-3')

CAATTTTTTTGTTACCCGTGTTTCATCATCATCATCATCATCATCATCAATCCCAAGAGGGTAGATATTATGAGTGGTGGCGGTGATGATGGTGGTGATGTGCGTGGAGGTATCGGATGGGCAT

PmiREN

Precursor miRNA Structure(5'-3') 

CAAUUUU    U    - -G   UU                   A      -----------AU   A 
       UUUG UACC C  UGU  CAUCAUCAUCAUCAUCAUC UCAUCA             CCC A
       |||| |||| |  |||  ||||||||||||||||||| ||||||             |||  
       AGGC AUGG G  GCG  GUAGUGGUGGUAGUAGUGG GGUGGU             GGG G
UACGGGU    U    A GU   -U                   C      GAGUAUUAUAGAU   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR5658      -AUGAUGAUGAUGAUGAUGAAA
vca-miR5658      UUUCAUCAUCAUCAUCAUCA--
                   * ** ** ** ** ** *