TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR9652-3p

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

AAGCUUAAUGAGAACAUGUG

miRBase

Precursor miRNA Sequence(5'-3')

CUAUUGAGAUGUGUUUGUCACCUGUUUGUCAUUAAGUUUCUUAGUGCCUUUGCCAUCUUAGUGAAGGGUCAAAAGGUACUUAGAAGCUUAAUGAGAACAUGUGACAAACGUACUUCGAGGCGGA

miRBase

Precursor miRNA Structure(5'-3') 

---CUA     A            C     G             U         --   -A  U 
      UUGAG UGUGUUUGUCAC UGUUU UCAUUAAGUUUCU AGUGCCUUU  GCC  UC U
      ||||| |||||||||||| ||||| ||||||||||||| |||||||||  |||  || A
      AGCUU AUGCAAACAGUG ACAAG AGUAAUUCGAAGA UCAUGGAAA  UGG  AG G
AGGCGG     C            U     -             U         AC   GA  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR10536        AGACAUGUUCUAAUCGUCAGCUUC
tae-miR9652-3p      AAGCUUAAUGAGAACAUGUG----
                    *  * *  *   * * *  *