TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR5200

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

UGUAGAUACUCCCUAAGGCUU

miRBase

Precursor miRNA Sequence(5'-3')

ACUAAUUAAGCCUUAGUGAAUAUCUACACUAGUAAGUUUUUCUUCAUGUUUGAAAUGCUUAGCAUUGUAGAUACUCCCUAAGGCUUGGGUGGU

miRBase

Precursor miRNA Structure(5'-3') 

    A           U  A        CUAG     U    UUC 
ACUA UUAAGCCUUAG GA UAUCUACA    UAAGU UUUC   A
|||| ||||||||||| || ||||||||    ||||| ||||   U
UGGU GGUUCGGAAUC CU AUAGAUGU    AUUCG AAAG   U
    G           C  C        UACG     U    UUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR5200          --UGUAGAUACUCCCUAAGGCUU
bdi-miR5200a-3p      --UGUAGAUACUCCCUAAGGCUU
bdi-miR5200b-3p      --UGUAGAUACUCCCUAAGGCUU
bdi-miR5200c         --UGUAGAUACUCUCUAAGGCUU
bdi-miR5200a-5p      GCCUUAGGGAAUAUCUACACU--
bdi-miR5200b-5p      GCCUUAGAGAGUAUCUACACU--
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