TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

tae-miR169

Organism

Triticum aestivum

Species

Mature miRNA Sequence(5'-3')

GGGCAAGUCACCCUGGGCUACC

miRBase

Precursor miRNA Sequence(5'-3')

UGGGGGUAAGAGGCCAUCUUCGAUAGCCAAGGAUGAUUUGCCUGUGAAACUCCCUUGGCAGCCGAGCUCUCUGCCACAGAGAGCGGCGUCCGGCGGUUCCAUGGGCAAGUCACCCUGGGCUACCCGAAGUACCUCUUACCACACCCCAU

miRBase

Precursor miRNA Structure(5'-3') 

-     ----        CCAU     -A     A   A             A    C  UU   A   GA          
 UGGGG    GUAAGAGG    CUUCG  UAGCC AGG UGAUUUGCCUGUG AACU CC  GGC GCC  GCUCUCUGC 
 |||||    ||||||||    |||||  ||||| ||| ||||||||||||| |||| ||  ||| |||  |||||||| C
 ACCCC    CAUUCUCC    GAAGC  AUCGG UCC ACUGAACGGGUAC UUGG GG  CUG CGG  CGAGAGACA 
U     ACAC        --AU     CC     G   C             C    C  -C   -   --

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

tae-miR169          GGGCAAGUCACCCUGGGCUACC
sit-miRN3032        GGGCAAAUCAUCC-GGGCUAAC
bdi-miR169k-3p      GGGCAAGUCAGCC-UGGCUACC
osa-miR169r-3p      UGGCAAGUC-UCCUCGGCUACC
bdi-miR169h-3p      --GGCAGUCACCU-UGGCUAGC
sbi-miR169d-3p      -GGGCGGUCACCU-UGGCUAGC
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