TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR8020

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

AAUUUCAUUGAGUAUGUUGUUGUU

miRBase

Precursor miRNA Sequence(5'-3')

AAUUUCAUUGAGUAUGUUGUUGUUGUAAAGGAUAUUGAAUGAAUGCAAGUACAAAAGUUACAACAACAACAUACUUACUGAAAUUCC

miRBase

Precursor miRNA Structure(5'-3') 

--       U                    ---AGGAUA   AAU 
  AAUUUCA UGAGUAUGUUGUUGUUGUAA         UUG   G
  ||||||| ||||||||||||||||||||         |||    
  UUAAAGU AUUCAUACAACAACAACAUU         AAC   U
CC       C                    GAAAACAUG   GUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR2592s-3p       AAAUGCUUGAGUCAUGUUGUU---
mtr-miR2592bq-3p      AAAUGCUUGAGUCAUGUUGUU---
stu-miR8020           AAUUUCAUUGAGUAUGUUGUUGUU
                      ** * * *     ********