TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR6024-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UUUUAGCAAGAGUUGUUUUCCC

miRBase

Precursor miRNA Sequence(5'-3')

AAAUUGGUAAUGGGAAGUGGAGAAACAACACUUGCUAAAAGAAGUUCAUCAGUGAUUCUCUCUUCUUUUGGAGUUUUUUUAGCAAGAGUUGUUUUCCCUCUUCUCAAUUCCGUCUCUC

miRBase

Precursor miRNA Structure(5'-3') 

--AAAUU  UAA       U  A        A             G    UC  -U  U 
       GG   UGGGAAG GG GAAACAAC CUUGCUAAAAGAA UUCA  AG  GA U
       ||   ||||||| || |||||||| ||||||||||||| ||||  ||  || C
       CC   ACUCUUC CC UUUUGUUG GAACGAUUUUUUU AGGU  UC  CU U
CUCUCUG  UUA       U  C        A             G    UU  UU  C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

stu-miR6024-3p      UUUUAGCAAGAGUUGUUUUCCC
sly-miR6024         UUUUAGCAAGAGUUGUUUUACC
                    ******************* **