TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR5304-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

CAAUGCAACAUACUCAUCACC

miRBase

Precursor miRNA Sequence(5'-3')

CAAUGCAACAUACUCAUCACCACAUCUUUCAUCUCAUGUGCAAAAGAUGAAAGUUACGGAGAUGAGUAUGGUGCAUUGGA

miRBase

Precursor miRNA Structure(5'-3') 

--       A          A  ACAU         CAUG 
  CAAUGCA CAUACUCAUC CC    CUUUCAUCU    U
  ||||||| |||||||||| ||    |||||||||     
  GUUACGU GUAUGAGUAG GG    GAAAGUAGA    A
AG       G          A  CAUU         AAAC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

sly-miR5304         UCAAUGCUACAUACUCAUCCC-
stu-miR5304-5p      -CAAUGCAACAUACUCAUCACC
                     ****** *********** *