TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR391-3p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

GCAUCAUACUCCUGCAUAUU

miRBase

Precursor miRNA Sequence(5'-3')

UACGCAGGAGAGAUGAUGCUGGACGAUAGAGAUAUGAGAAUAUUAAAGGGGCUUUAAUUUAUUGGCCAGCAUCAUACUCCUGCAUAUU

miRBase

Precursor miRNA Structure(5'-3') 

--UAC       AG          A       GAUAU   AAUAU 
     GCAGGAG  AUGAUGCUGG CGAUAGA     GAG     U
     |||||||  |||||||||| |||||||     |||     A
     CGUCCUC  UACUACGACC GUUAUUU     UUC     G
UUAUA       -A          G       --AAU   GGGGA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR391a-3p      AGCAUCAUAUCUCCUGCAUAG-
stu-miR391-3p       -GCAUCAUA-CUCCUGCAUAUU
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