TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR3627-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UCGCAGGAGAGAUGGCACUUAG

miRBase

Precursor miRNA Sequence(5'-3')

UCGCAGGAGAGAUGGCACUUAGCAUUCCUUUUAAUUGGUAAAAUGCCUAAAUGGAACCAAUUAAGUGCCUCUGUCUUUCGACA

miRBase

Precursor miRNA Structure(5'-3') 

--   C    G   U         --CA    U    AUU      
  UCG AGGA AGA GGCACUUAG    UUCC UUUA   GGUAA 
  ||| |||| ||| |||||||||    |||| ||||   |||| A
  AGC UUCU UCU CCGUGAAUU    AAGG AAAU   CCGUG 
AC   U    G   -         AACC    U    ---

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

fve-miR3627a        UCGCAGGAGAGAUGGCACUACC
fve-miR3627b        UCGCAGGAGAGAUGGCACUACC
mdm-miR3627c        UCGCAGGAGAGAUGGCACUA--
mdm-miR3627b        UCGCAGGAGAGAUGGCACUA--
mdm-miR3627a        UCGCAGGAGAGAUGGCACUA--
stu-miR3627-5p      UCGCAGGAGAGAUGGCACUUAG
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