TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

stu-miR171a-5p

Organism

Solanum tuberosum

Species

Mature miRNA Sequence(5'-3')

UAUUGGCCUGGUUCACUCAGA

miRBase

Precursor miRNA Sequence(5'-3')

UAUUGGCCUGGUUCACUCAGACAACAAAAUGAAACUAUAUUUAAAUGGUGGAGUUUCUGUUUUCCGUUUGAUUGAGCCGUGCCAAUAUC

miRBase

Precursor miRNA Structure(5'-3') 

--       C       C      AAC   AU      A    U 
  UAUUGGC UGGUUCA UCAGAC   AAA  GAAACU UAUU A
  ||||||| ||||||| ||||||   |||  |||||| |||| A
  AUAACCG GCCGAGU AGUUUG   UUU  CUUUGA GUGG G
CU       U       U      CCU   GU      G    U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

bra-miR170          UAUUGGCCUGGUUCACUCAGA
ath-miR170-5p       UAUUGGCCUGGUUCACUCAGA
ath-miR171a-5p      UAUUGGCCUGGUUCACUCAGA
aly-miR170-5p       UAUUGGCCUGGUUCACUCAGA
aly-miR171a-5p      UAUUGGCCUGGUUCACUCAGA
gma-miR171j-5p      UAUUGGCCUGGUUCACUCAGA
stu-miR171a-5p      UAUUGGCCUGGUUCACUCAGA
stu-miR171c-5p      UAUUGGCCUGGUUCACUCAGA
sly-miR171f         UAUUGGCCUGGUUCACUCAGA
csi-miR171f-5p      UAUUGGCCUGGUUCACUCAGA
zma-miR171a-5p      UAUUGGCGAGGUUCAAUCAGA
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