TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

pvi-miR1432a

Organism

Panicum virgatum

Species

Mature miRNA Sequence(5'-3')

CUCAGGAGAGAUGACACCGAUG

PmiREN

Precursor miRNA Sequence(5'-3')

TTGTGGGTGTGCGTCCTAAGCTCAGGAGAGATGACACCGATGTCGGACGGGCCGATCGAGATGTGCATCTGCTGTGTCGATCCGTCCGAGGCCGGTGTCATTTCCCCTGAACTCAGGACCCATTAGCCCTGAA

PmiREN

Precursor miRNA Structure(5'-3') 

UUGU    --   C     A  C     A            A G        GCCG     G   U  A 
    GGGU  GUG GUCCU AG UCAGG GAGAUGACACCG U UCGGACGG    AUCGA AUG GC U
    ||||  ||| ||||| || ||||| |||||||||||| | ||||||||    ||||| ||| ||  
    CCCG  UAC CAGGA UC AGUCC CUUUACUGUGGC G AGCCUGCC    UAGCU UGU CG G
AAGU    AU   C     C  A     C            C G        ----     G   -  U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

pvi-miR1432b        -UCAGGAGAGAUGACACCGAC-
bdi-miR1432         UUCAGGAGAGAUGACACCGACA
osa-miR1432-5p      AUCAGGAGAGAUGACACCGAC-
sit-miR1432         -UCAGGAGAGAUGACACCGAC-
zma-miR1432-5p      CUCAGGAGAGAUGACACCGAC-
sbi-miR1432         CUCAGGAGAGAUGACACCGAC-
pvi-miR1432a        CUCAGGAGAGAUGACACCGAUG
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